http://www.machine-envy.com/blog Tue, 27 Jul 2010 23:23:10 +0000 http://wordpress.org/?v=2.8.5 en hourly 1 http://www.machine-envy.com/blog/2009/10/27/cogent-the-unsung-hero-of-bioinformatics-and-python/ http://www.machine-envy.com/blog/2009/10/27/cogent-the-unsung-hero-of-bioinformatics-and-python/#comments Tue, 27 Oct 2009 16:57:53 +0000 James Casbon http://www.machine-envy.com/blog/?p=225 I recently started using cogent – the COmparative GENomics Toolkit and discovered that it is an excellent piece of kit. A google search for ‘python ensembl‘ doesn’t even show it at all, yet it definitely has the best bindings for ensembl avaiable in python – they’re based on sqlalchemy making it easy enough to pull of any query. Have a look at the full list of examples.

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